Reference

Main functions

map_qtl()

Map marginal or response QTLs for feature-SNP pairs

map_qtl_for_each()

Map marginal or response QTLs for a feature-SNP pair

Functions for simulation

make_count_data()

Simulate molecular count data

make_sim_data()

Generate data for simulation analysis

Utility functions

filter_geno()

Filter genotypes

get_eigen()

Get eigenvectors and eigenvalues of the covariance matrix

get_geno()

Create a genotype matrix

plot_profile_h2()

Plot the profile log-likelihood over h2

preprocess_pheno()

Pre-process molecular count data

Internal functions

get_mle()

Get MLE estimates

get_mu()

Nonlinear mean function for GxT model