All functions

classifygxt-package classifygxt

The 'classifygxt' package.

do_bms()

Perform BMS for classifying GxT interactions

format_gp()

Prepare data for a genotype-phenotype plot

format_input()

Format input

format_pp()

Prepare data for a barplot of posterior probability

get_co()

Compute posterior probability of crossover interaction

get_est()

Extract parameter estimates

get_map()

Get MAP estimates and Hessian

get_model_names()

Get the names of the eight models

get_pp()

Extract posterior probability

get_sign()

Get posterior probability accounting for the sign of effect sizes

get_sign_names()

Get the names of the 27 models

get_tu_lambda()

Get eigenvectors and eigenvalues of the covariance matrix

make_data()

Generate data for simulation analysis

make_gp_plot()

Make a genotype-phenotype plot with model fit

make_heatmap()

Make a heatmap of posterior probability

make_pp_plot()

Make a barplot of posterior probability